Stem-loop lja-MIR11143

Accession

MI0035902

Description

Lotus japonicus lja-MIR11143 precursor miRNA

Sequence

gagcaaaaCAAACGGACGUUACGGCAACCGCguugcGGUUGUUGUUGCGUCGUUUUUAAGugcuc
(((((....(((((.((((.(((((((((((...))))))))))).))))))))).....)))))

Structure

     -aaaC     G    U           g 
gagca     AAACG ACGU ACGGCAACCGC  
|||||     ||||| |||| ||||||||||| u
cucgu     UUUGC UGCG UGUUGUUGGcg  
     GAAUU     -    U           u 

Annotation confidence Not enough data

Genome context

Chr0: 5492425-5492489 [+]

Mature lja-miR11143-5p

• Accession: MIMAT0043920
• Description: Lotus japonicus lja-miR11143-5p mature miRNA
• Sequence: 9 - CAAACGGACGUUACGGCAACCGC - 31
• Evidence: experimental ; Illumina [1]

Mature lja-miR11143-3p

• Accession: MIMAT0043921
• Description: Lotus japonicus lja-miR11143-3p mature miRNA
• Sequence: 37 - GGUUGUUGUUGCGUCGUUUUUAAG - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256