miRBase entry: lja-MIR11140

Stem-loop lja-MIR11140


Accession
MI0035897
Description
Lotus japonicus lja-MIR11140 precursor miRNA


Sequence

cAAUUAUGCGUUGGCUCAACAAGCgugcgcuucgcacuacccuaacucgUUUCCGAGCUUAACGCAUAAUUGC
(((((((((((((((((...(((((((((...)))))...........))))..)))).))))))))))))).

Structure
-             -    AAC    -----------     c 
 cAAUUAUGCGUUG GCUC   AAGC           gugcg  
 ||||||||||||| ||||   ||||           ||||| u
 GUUAAUACGCAAU CGAG   UUUg           cacgc  
C             U    -CC    cucaaucccau     u 


Annotation confidence Not enough data
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Genome context
Chr0: 17555727-17555799 [+]

Database links

Mature lja-miR11140-5p

Accession MIMAT0043913
Description Lotus japonicus lja-miR11140-5p mature miRNA
Sequence 2 - AAUUAUGCGUUGGCUCAACAAGC - 24
Evidence experimental
Illumina [1]

Mature lja-miR11140-3p

Accession MIMAT0043914
Description Lotus japonicus lja-miR11140-3p mature miRNA
Sequence 50 - UUUCCGAGCUUAACGCAUAAUUGC - 73
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256