miRBase entry: lja-MIR11138

Stem-loop lja-MIR11138


Accession
MI0035894
Description
Lotus japonicus lja-MIR11138 precursor miRNA


Sequence

uaauauaaaaccauuaaagugacccuuacccagcagcuuaagcuuuugggcugcagaaccaagucaaguaaccacuuuaucccaAAAGCUUAAGCUGUUGGGUAAGGgucacuuuaaugguuuuauauua
((((((((((((((((((((((((((((((((((((((((((((((((((.((.((..................)).)).))))))))))))))))))))))))))))))))))))))))))))))))))

Structure
                                                  c  c  aaccaagu 
uaauauaaaaccauuaaagugacccuuacccagcagcuuaagcuuuuggg ug ag        c
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||         
auuauauuuugguaauuucacugGGAAUGGGUUGUCGAAUUCGAAAaccc au uc        a
                                                  u  u  accaauga 


Annotation confidence Not enough data
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Genome context
Chr0: 2572935-2573064 [+]

Database links

Mature lja-miR11138-3p

Accession MIMAT0043910
Description Lotus japonicus lja-miR11138-3p mature miRNA
Sequence 85 - AAAGCUUAAGCUGUUGGGUAAGG - 107
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256