miRBase entry: lja-MIR11135c

Stem-loop lja-MIR11135c


Accession
MI0035891
Description
Lotus japonicus lja-MIR11135c precursor miRNA


Sequence

ugauuggauaagcuuauacaauacauuaugugcuuauccauuguuuugugcaaacaUUGUAUUGUAUAAGCUUAUCCAuca
((((.((((((((((((((((((((.....(((................))).....))))))))))))))))))))))))

Structure
    u                    uuaug   uuaucca 
ugau ggauaagcuuauacaauaca     ugc       u
|||| ||||||||||||||||||||     |||        
acuA CCUAUUCGAAUAUGUUAUGU     acg       u
    -                    Uacaa   uguuuug 


Annotation confidence Not enough data
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Genome context
Chr4: 27547168-27547248 [+]

Database links

Mature lja-miR11135c-3p

Accession MIMAT0043906
Description Lotus japonicus lja-miR11135c-3p mature miRNA
Sequence 57 - UUGUAUUGUAUAAGCUUAUCCA - 78
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256