miRBase entry: lja-MIR11134

Stem-loop lja-MIR11134


Accession
MI0035884
Description
Lotus japonicus lja-MIR11134 precursor miRNA


Sequence

aauuugguuuuggcuuaagUUUACUCUUGAUGGUCAGAGAAcaaaaaacucaaucacucaauacuuaaauuauaaauacaaauaugaaguugagagacaucauauuguauuucucauuuaaguauugagagaccaauuuuuuguuUUCUGAUCAUCUAGGGUAAACUuacaaaaauaucaaauu
((((((((.((....((((((((((((.((((((((((((((((((((.....((.((((((((((((((...((((((((.(((((.(((....))).)))))))))))))...)))))))))))))).))....)))))))))))))))))))).))))))))))))....)).))))))))

Structure
        u  ggcu            U                    cucaa  a              uau        a     a   g 
aauuuggu uu    uaagUUUACUCU GAUGGUCAGAGAAcaaaaaa     uc cucaauacuuaaau   aaauacaa uauga guu a
|||||||| ||    |||||||||||| ||||||||||||||||||||     || ||||||||||||||   |||||||| ||||| |||  
uuaaacua aa    auUCAAAUGGGA CUACUAGUCUUuuguuuuuu     ag gaguuaugaauuua   uuuauguu auacu cag g
        u  aaac            U                    -aacc  a              cuc        -     a   a 


Annotation confidence Not enough data
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Genome context
Chr1: 41057086-41057269 [+]

Database links

Mature lja-miR11134-5p

Accession MIMAT0043897
Description Lotus japonicus lja-miR11134-5p mature miRNA
Sequence 20 - UUUACUCUUGAUGGUCAGAGAA - 41
Evidence experimental
Illumina [1]

Mature lja-miR11134-3p

Accession MIMAT0043898
Description Lotus japonicus lja-miR11134-3p mature miRNA
Sequence 146 - UUCUGAUCAUCUAGGGUAAACU - 167
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256