Stem-loop lja-MIR11133

Accession

MI0035883

Description

Lotus japonicus lja-MIR11133 precursor miRNA

Sequence

ccagaagagacuuuugcUUCCUUAAGGCUAACAGCUUGGccaacauccuuggcuugaugaaaaguggcuaaagcauccacuaagaaagauugaagguuggccauagcagcagccuggugagaaucaaguuuuuggccaagaaggaagacaagcaacuccuugg
((((..(((...(((((((((((.(((((....((((((((((...((((.(.((.......(((((.........)))))......)).).))))))))))).)))...)))))(((.((((......)))).)))...))))))).))))...))).))))

Structure

    aa   acu    -       ------------------------A     AACA   -       cau    g c  gaugaaa     cua 
ccag  gag   uuug cUUCCUU                         AGGCU    GCU UGGccaa   ccuu g uu       agugg   a
||||  |||   |||| |||||||                         |||||    ||| |||||||   |||| | ||       |||||   a
gguu  cuc   gaac gaaggaa                         uccga    cga accgguu   ggaa u ag       ucacc   g
    -c   aac    a       gaaccgguuuuugaacuaagagugg     -cga   u       ---    g u  -aaagaa     uac 

Annotation confidence Not enough data

Genome context

Chr1: 29612230-29612392 [+]

Mature lja-miR11133-5p

• Accession: MIMAT0043896
• Description: Lotus japonicus lja-miR11133-5p mature miRNA
• Sequence: 18 - UUCCUUAAGGCUAACAGCUUGG - 39
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256