miRBase entry: lja-MIR11132

Stem-loop lja-MIR11132


Accession
MI0035882
Description
Lotus japonicus lja-MIR11132 precursor miRNA


Sequence

guuauccccaacaUUAGCAACUUUGAGUACUUUGAaagugaaauuucaaguucagagugccaaaguugcuaauguaggggugac
((((.((((.(((((((((((((((.((((((((((..(((....)))..))))))))))))))))))))))))).))))))))

Structure
    u    a               A          ag   a 
guua cccc acaUUAGCAACUUUG GUACUUUGAa  uga a
|||| |||| ||||||||||||||| ||||||||||  |||  
cagu gggg uguaaucguugaaac cgugagacuu  acu u
    -    a               -          ga   u 


Annotation confidence Not enough data
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Genome context
Chr2: 41984857-41984940 [+]

Database links

Mature lja-miR11132-5p

Accession MIMAT0043895
Description Lotus japonicus lja-miR11132-5p mature miRNA
Sequence 14 - UUAGCAACUUUGAGUACUUUGA - 35
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256