Stem-loop lja-MIR11131

Accession

MI0035880

Description

Lotus japonicus lja-MIR11131 precursor miRNA

Sequence

aauuuaacauuguguggUCUUUUGGUUCGAUUCUAAGACaaaucuuugauuagaaaggauuaguauuugauaugcauuccauuccaaauuggagguuucuCUUAGAUUGAACAAAUGAUCccacaauguuagauu
((((((((((((((.((((.((((.((((((.((((((.((((((((((((.(((.(((.(.((((.....))))).))).)))..)))))))))))).)))))))))))))))).)))).))))))))))))))

Structure

              u    U    G      U      C            -a   a   u a    u 
aauuuaacauugug ggUC UUUG UUCGAU CUAAGA aaaucuuugauu  gaa gga u guau u
|||||||||||||| |||| |||| |||||| |||||| ||||||||||||  ||| ||| | |||| g
uuagauuguaacac CUAG AAAC AAGUUA GAUUCu uuuggagguuaa  cuu ccu a cgua a
              c    U    -      -      c            ac   a   u -    u 

Annotation confidence Not enough data

Genome context

Chr3: 45679920-45680054 [-]

Mature lja-miR11131-5p

• Accession: MIMAT0043891
• Description: Lotus japonicus lja-miR11131-5p mature miRNA
• Sequence: 18 - UCUUUUGGUUCGAUUCUAAGAC - 39
• Evidence: experimental ; Illumina [1]

Mature lja-miR11131-3p

• Accession: MIMAT0043892
• Description: Lotus japonicus lja-miR11131-3p mature miRNA
• Sequence: 101 - CUUAGAUUGAACAAAUGAUC - 120
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256