miRBase entry: lja-MIR168

Stem-loop lja-MIR168


Accession
MI0035878
Description
Lotus japonicus lja-MIR168 precursor miRNA

Literature search
1 open access papers mention lja-MIR168
(1 sentences)

Sequence

gcuucgcggucucuaauUCGCUUGGUGCAGGUCGGGAACcgcugcugcuucugccguuuucgcgcguaaucacucaccggaggagcgguuaccgccgccgguuggaucggaUCCCGCCUUGCAUCAACUGAAUcggaacccgccuugaagc
(((((((((..(((.(((((.((((((((((.(((((.((((....))(((.((((.....(((.((((((.(((.......))).)))))))))...)))).)))..)).))))).)))))))))).))))).)))..))))...)))))

Structure
     ---    uc   a     C          U     A  gcugcugc   u    uuuuc   c      a   ac 
gcuuc   gcgg  ucu auUCG UUGGUGCAGG CGGGA Cc        uuc gccg     gcg guaauc cuc  c
|||||   ||||  ||| ||||| |||||||||| ||||| ||        ||| ||||     ||| |||||| |||  g
cgaag   cgcc  agg UAAGU AACUACGUUC GCCCU gg        agg uggc     cgc cauugg gag  g
     uuc    ca   c     C          C     a  ------cu   u    --cgc   -      c   ga 


Annotation confidence Not enough data
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Genome context
Chr2: 25511662-25511812 [-]

Database links

Mature lja-miR168-5p

Accession MIMAT0043887
Description Lotus japonicus lja-miR168-5p mature miRNA
Sequence 18 - UCGCUUGGUGCAGGUCGGGAAC - 39
Evidence experimental
Illumina [1]

Mature lja-miR168-3p

Accession MIMAT0043888
Description Lotus japonicus lja-miR168-3p mature miRNA
Sequence 112 - UCCCGCCUUGCAUCAACUGAAU - 133
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256