miRBase entry: lja-MIR11129

Stem-loop lja-MIR11129


Accession
MI0035876
Description
Lotus japonicus lja-MIR11129 precursor miRNA


Sequence

guuuuucuauauauguaauauaaaucuuguuucaaaucuuUAUUAUUCUGUUUAUGGAAGGC
..(((((((((.(((.((((((((..((......))..)))).)))).))).))))))))).

Structure
gu         u   u    -    uc  gu 
  uuuucuaua aug aaua uaaa  uu  u
  ||||||||| ||| |||| ||||  ||   
  GGAAGGUAU UGU UUAU AUuu  aa  u
-C         U   C    U    cu  ac 


Annotation confidence Not enough data
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Genome context
Chr4: 23349736-23349797 [+]

Database links

Mature lja-miR11129-3p

Accession MIMAT0043884
Description Lotus japonicus lja-miR11129-3p mature miRNA
Sequence 41 - UAUUAUUCUGUUUAUGGAAGGC - 62
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256