miRBase entry: lja-MIR11097d

Stem-loop lja-MIR11097d


Accession
MI0035869
Description
Lotus japonicus lja-MIR11097d precursor miRNA


Sequence

caaaaguuauggcuuauuaaaaAGAGUUUAAUGGAUAUGCACUGucaguguaaaacaguuuuacacugacaaccaaucacaacaugccauauaagugaaauaauaucuuucaucuuaaauuuuaauuaaaacaagaauauauuugcugauguggcagaauucaauugggcgacuguguaaacaaaguuuacacugacaguguauacccauuaaauucuauuaaaaauaagaagacuaaug
....((((....((((((.((.((((((((((((.(((((((((((((((((((.....(((((((......(((((.......((((((((.(((.(((((...((((.......................))))...)))))))).)))))))).......)))))......))))))).....))))))))))))))))))).)))))))))))).))...))))))..))))....

Structure
caaa    augg      --a  a            A                   acagu       ugacaa     cacaaca        a   g     aua    ucaucuuaaa 
    aguu    cuuauu   aa AGAGUUUAAUGG UAUGCACUGucaguguaaa     uuuacac      ccaau       ugccauau agu aaaua   ucuu          u
    ||||    ||||||   || |||||||||||| |||||||||||||||||||     |||||||      |||||       |||||||| ||| |||||   ||||          u
    ucag    gaauaa   uu ucuuaaauuacc auaugugacagucacauuu     aaaugug      gguua       acggugua ucg uuuau   agaa          u
guaa    --aa      aaa  a            c                   gaaac       ucagcg     acuuaag        g   -     aua    caaaauuaau 


Annotation confidence Not enough data
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Genome context
Chr0: 11832816-11833055 [+]

Database links

Mature lja-miR11097d-5p

Accession MIMAT0043874
Description Lotus japonicus lja-miR11097d-5p mature miRNA
Sequence 23 - AGAGUUUAAUGGAUAUGCACUG - 44
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256