miRBase entry: lja-MIR11108k

Stem-loop lja-MIR11108k


Accession
MI0035866
Description
Lotus japonicus lja-MIR11108k precursor miRNA


Sequence

uucuuagucuaaucACAUUGGAGAUAAGUGAGUUGGaaauaaauuaauaaauaaaauauagaaauuUCUACUCACUUAUCUUCAAUGUGAuuagaugaugag
.((...(((((((((((((((((((((((((((.((((((.......................)))))))))))))))))))))))))))))))))...)).

Structure
u  uua                           U      aaauuaauaa 
 uc   gucuaaucACAUUGGAGAUAAGUGAGU GGaaau          a
 ||   ||||||||||||||||||||||||||| ||||||          u
 ag   uagauuAGUGUAACUUCUAUUCACUCA UCUuua          a
g  uag                           -      aagauauaaa 


Annotation confidence Not enough data
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Genome context
Chr2: 19151808-19151909 [+]

Database links

Mature lja-miR11108k-5p

Accession MIMAT0043870
Description Lotus japonicus lja-miR11108k-5p mature miRNA
Sequence 15 - ACAUUGGAGAUAAGUGAGUUGG - 36
Evidence experimental
Illumina [1]

Mature lja-miR11108k-3p

Accession MIMAT0043871
Description Lotus japonicus lja-miR11108k-3p mature miRNA
Sequence 67 - UCUACUCACUUAUCUUCAAUGUGA - 90
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256