Stem-loop lja-MIR11108g

Accession

MI0035864

Description

Lotus japonicus lja-MIR11108g precursor miRNA

Sequence

caccauccaaucACAUUGGAGAUAAAUGAGUUGGaaauaaauuaauaaauaaaauauaaaaauuccaacucucuuaucuccaaugugcuuggaugaug
...(((((((.((((((((((((((..(((((((((..........................)))))))))..)))))))))))))).)))))))...

Structure

cac       u              AU         auaaauuaauaa 
   cauccaa cACAUUGGAGAUAA  GAGUUGGaa            a
   ||||||| ||||||||||||||  |||||||||             
   guagguu guguaaccucuauu  cucaaccuu            u
gua       c              cu         aaaaauauaaaa 

Annotation confidence Not enough data

Genome context

Chr3: 6726475-6726572 [+]

Mature lja-miR11108g-5p

• Accession: MIMAT0043868
• Description: Lotus japonicus lja-miR11108g-5p mature miRNA
• Sequence: 13 - ACAUUGGAGAUAAAUGAGUUGG - 34
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256