miRBase entry: lja-MIR11124

Stem-loop lja-MIR11124


Accession
MI0035862
Description
Lotus japonicus lja-MIR11124 precursor miRNA


Sequence

ugagcuuggaauuaauuuuuaUCUCGUCUGCAUUUUGUGGAUGauucuucuguugaguguuuguaauuuguucacacuccaaggauaugaUCCCAUGAUGACAGAUGAGAUAagaaauuuuuccacggcuaca
..(((((((((..(.(((((((((((((((((((.((.((((.((..((((...((((((.............))))))..)))).)).)))))).)))).))))))))))))))).)..))))).))))...

Structure
-ug    -     uu a               -    U  U    G  uc    guu      uugua 
   agcu uggaa  a uuuuuaUCUCGUCUG CAUU UG GGAU au  uucu   gagugu     a
   |||| |||||  | ||||||||||||||| |||| || |||| ||  ||||   ||||||     u
   ucgg accuu  u aagaAUAGAGUAGAC GUAG AC CCUa ua  agga   cucaca     u
aca    c     uu a               A    U  -    g  -u    -ac      cuugu 


Annotation confidence Not enough data
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Genome context
Chr1: 38467201-38467333 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from lja-MIR11124
Name Accession Chromosome Start End Strand Confidence




Database links

Mature lja-miR11124-5p

Accession MIMAT0043865
Description Lotus japonicus lja-miR11124-5p mature miRNA
Sequence 22 - UCUCGUCUGCAUUUUGUGGAUG - 43
Evidence experimental
Illumina [1]

Mature lja-miR11124-3p

Accession MIMAT0043866
Description Lotus japonicus lja-miR11124-3p mature miRNA
Sequence 91 - UCCCAUGAUGACAGAUGAGAUA - 112
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256