Stem-loop lja-MIR11123

Accession

MI0035861

Description

Lotus japonicus lja-MIR11123 precursor miRNA

Sequence

uaagguccaauguaauuuAGAAAUAGUUGGCCUAAUAAUcuaauuugguuaaaacuuaaacgaggauUAUUAGGCACCAUUGUUUCUUGauuaccuuagaucuug
(((((((.((.((((((.(((((((((.(((((((((((((....(.(((........))).))))))))))))).).))))))))).)))))).)).)))))))

Structure

       c  u      u         U -            aauu g   aaa 
uaagguc aa guaauu AGAAAUAGU G GCCUAAUAAUcu    u guu   a
||||||| || |||||| ||||||||| | ||||||||||||    | |||    
guucuag uu cauuaG UCUUUGUUA C CGGAUUAUuagg    a caa   c
       a  c      U         C A            ---- g   auu 

Annotation confidence Not enough data

Genome context

Chr4: 34881736-34881840 [-]

Mature lja-miR11123-5p

• Accession: MIMAT0043863
• Description: Lotus japonicus lja-miR11123-5p mature miRNA
• Sequence: 19 - AGAAAUAGUUGGCCUAAUAAU - 39
• Evidence: experimental ; Illumina [1]

Mature lja-miR11123-3p

• Accession: MIMAT0043864
• Description: Lotus japonicus lja-miR11123-3p mature miRNA
• Sequence: 68 - UAUUAGGCACCAUUGUUUCUUG - 89
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256