miRBase entry: lja-MIR11116

Stem-loop lja-MIR11116


Accession
MI0035846
Description
Lotus japonicus lja-MIR11116 precursor miRNA


Sequence

ugaagagcauugauguguacacccuccgguuacauauauaaggaaaaaacacuuuuuagguucauucauuuaaugaauguaucuaguuguuuuaaugacuagauacauucaacuagauacauucauuaaaugaaagaaccuaaaaaaUGUUUUUUGCUUAUAUAUGUGaccggaggguguaugccauauuuuacucugcca
...((((....(((((((((((((((((((((((((((((((.((((((((.(((((((((((.(((((((((((((((((((((((((....((((........))))))))))))))))))))))))))))).))))))))))).)))))))).)))))))))))))))))))))))))...))))))...))))....

Structure
-uga    cauu      ---                         g        c           a                         uuuu    acu 
    agag    gaugug   uacacccuccgguuacauauauaag aaaaaaca uuuuuagguuc uucauuuaaugaauguaucuaguug    aaug   a
    ||||    ||||||   ||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||    ||||    
    ucuc    uuauac   augugggaggccaGUGUAUAUAUUC UUUUUUGU aaaaauccaag aaguaaauuacuuacauagaucaac    uuac   g
accg    -auu      cgu                         G        a           a                         ----    aua 


Annotation confidence Not enough data
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Genome context
Chr1: 9479391-9479591 [+]

Database links

Mature lja-miR11116-3p

Accession MIMAT0043843
Description Lotus japonicus lja-miR11116-3p mature miRNA
Sequence 148 - UGUUUUUUGCUUAUAUAUGUG - 168
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256