miRBase entry: lja-MIR11115

Stem-loop lja-MIR11115


Accession
MI0035844
Description
Lotus japonicus lja-MIR11115 precursor miRNA


Sequence

uaugcacuccgaaggaggauggUGGUAUGUAACUUAGAAGUUUcaaacaaaggucuauaauuugggcacuaugagagucucuacccuuguuugaaacuucuauguuacauaccaccauccuccuucggagugaaua
....(((((((((((((((((((((((((((((.((((((((((((((((.(((......(((.(......).)))......))).)))))))))))))))).)))))))))))))))))))))))))))))....

Structure
uaug                             U                a   cuauaa   g gc 
    cacuccgaaggaggauggUGGUAUGUAAC UAGAAGUUUcaaacaa ggu      uuu g  a
    ||||||||||||||||||||||||||||| |||||||||||||||| |||      ||| |   
    gugaggcuuccuccuaccaccauacauug aucuucaaaguuuguu cca      aga u  c
auaa                             u                c   ucucug   g au 


Annotation confidence Not enough data
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Genome context
Chr4: 3791878-3792013 [+]

Database links

Mature lja-miR11115-5p

Accession MIMAT0043840
Description Lotus japonicus lja-miR11115-5p mature miRNA
Sequence 23 - UGGUAUGUAACUUAGAAGUUU - 43
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256