Stem-loop lja-MIR11113

Accession

MI0035840

Description

Lotus japonicus lja-MIR11113 precursor miRNA

Sequence

agauuacgauauauaucUGAUAUGUAAUUAGGAAACUAuguaauuaagauuagacuaucaaauuuaaucuuaauuauauaGUUUCCUGAUUACAUAUCAGAuguauuucuuaaucu
((((((.((.((((((((((((((((((((((((((((((((((((((((((((........)))))))))))))))))))))))))))))))))))))))))))).)).))))))

Structure

      c  u                                            cua 
agauua ga auauaucUGAUAUGUAAUUAGGAAACUAuguaauuaagauuaga   u
|||||| || ||||||||||||||||||||||||||||||||||||||||||||    
ucuaau cu uauguAGACUAUACAUUAGUCCUUUGauauauuaauucuaauuu   c
      u  u                                            aaa 

Annotation confidence Not enough data

Genome context

Chr4: 34848095-34848210 [-]

Mature lja-miR11113-5p

• Accession: MIMAT0043833
• Description: Lotus japonicus lja-miR11113-5p mature miRNA
• Sequence: 18 - UGAUAUGUAAUUAGGAAACUA - 38
• Evidence: experimental ; Illumina [1]

Mature lja-miR11113-3p

• Accession: MIMAT0043834
• Description: Lotus japonicus lja-miR11113-3p mature miRNA
• Sequence: 81 - GUUUCCUGAUUACAUAUCAGA - 101
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256