miRBase entry: lja-MIR477

Stem-loop lja-MIR477


Accession
MI0035836
Description
Lotus japonicus lja-MIR477 precursor miRNA


Sequence

guagcauuuauugcucACUCUCCCUCAAGGGCUUCUGAaaucgccuccaaagaagcuagucUGAAGUUCUUAGGGAGAGUGGuuaauauuuguuac
((((((..(((((.(((((((((((.(((((((((.((....((.((....)).))...)).)))))))))))))))))))).)))))..))))))

Structure
      uu     c           C         U  aauc  c  c 
guagca  uauug ucACUCUCCCU AAGGGCUUC GA    gc uc a
||||||  ||||| ||||||||||| ||||||||| ||    || ||  
cauugu  auaau GGUGAGAGGGA UUCUUGAAG cu    cg ag a
      uu     u           -         U  -gau  a  a 


Annotation confidence Not enough data
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Genome context
Chr2: 31876490-31876585 [+]

Database links

Mature lja-miR477-5p

Accession MIMAT0043828
Description Lotus japonicus lja-miR477-5p mature miRNA
Sequence 17 - ACUCUCCCUCAAGGGCUUCUGA - 38
Evidence experimental
Illumina [1]

Mature lja-miR477-3p

Accession MIMAT0043829
Description Lotus japonicus lja-miR477-3p mature miRNA
Sequence 62 - UGAAGUUCUUAGGGAGAGUGG - 82
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256