miRBase entry: lja-MIR11077d

Stem-loop lja-MIR11077d


Accession
MI0035819
Description
Lotus japonicus lja-MIR11077d precursor miRNA


Sequence

gaaagggaaagaaaacacGGAAAUCGAGGAGUGAACUUGgauuaaaccuuagucuAAAUUCACUCCUCAAUUUCCGUGuuuuccuuccuuuuc
(((((((((.((((((((((((((.((((((((((.(((((((((...))))))))).)))))))))).)))))))))))))).)))))))))

Structure
         a              C          C         a 
gaaagggaa gaaaacacGGAAAU GAGGAGUGAA UUGgauuaa  
||||||||| |||||||||||||| |||||||||| ||||||||| c
cuuuuccuu cuuuuGUGCCUUUA CUCCUCACUU AAucugauu  
         c              A          A         c 


Annotation confidence Not enough data
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Genome context
Chr4: 25227588-25227680 [-]

Database links

Mature lja-miR11077d-5p

Accession MIMAT0043803
Description Lotus japonicus lja-miR11077d-5p mature miRNA
Sequence 19 - GGAAAUCGAGGAGUGAACUUG - 39
Evidence experimental
Illumina [1]

Mature lja-miR11077d-3p

Accession MIMAT0043804
Description Lotus japonicus lja-miR11077d-3p mature miRNA
Sequence 56 - AAAUUCACUCCUCAAUUUCCGUG - 78
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256