miRBase entry: lja-MIR11077b

Stem-loop lja-MIR11077b


Accession
MI0035814
Description
Lotus japonicus lja-MIR11077b precursor miRNA


Sequence

acccauagacuuuguuugguuggguggaaggaaagugggaagaaaagaaaacacggaaacCGAUGGAUGAAUUAAGACUACaccuuagucuuaauucacuccucgguuuccguguuuucuuuccuucucaguuuccuuccacccaaccaaacauagucauagggug
((((...((((.((((((((((((((((((((((.(((((((.((((((((((((((((((((.((((((((((((((((.....))))))))))))).))))))))))))))))))))))).))))))).)))))))))))))))))))))).))))...)))).

Structure
-    aua    u                      g       a                    U   -             C 
 accc   gacu uguuugguuggguggaaggaaa ugggaag aaagaaaacacggaaacCGA GGA UGAAUUAAGACUA a
 ||||   |||| |||||||||||||||||||||| ||||||| |||||||||||||||||||| ||| ||||||||||||| c
 uggg   cuga acaaaccaacccaccuuccuuu acucuuc uuucuuuugugccuuuggcu ccu acuuaauucugau c
g    aua    u                      g       c                    -   c             u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature lja-miR11077b-5p

Accession MIMAT0043798
Description Lotus japonicus lja-miR11077b-5p mature miRNA
Sequence 61 - CGAUGGAUGAAUUAAGACUAC - 81
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256