miRBase entry: lja-MIR11101a

Stem-loop lja-MIR11101a


Accession
MI0035812
Description
Lotus japonicus lja-MIR11101a precursor miRNA


Sequence

gaguuugcucaaaauuuuggugauauaacucaaaauguuauuccucucauuucauuCGAGAAACAACAUUUUGGGGGgccucuguuaacaccaaaauuucuagcuuuggaaauuu
......(((..(((((((((((..(((((.......))))).......................((((....((....))..))))..)))))))))))..)))...........

Structure
-----gaguuu   ca           auauaacucaaaauguuauuccucucauuucauuCGAGAAAC    UUUU  G 
           gcu  aaauuuuggug                                          AACA    GG G
           |||  |||||||||||                                          ||||    ||  
           cga  uuuaaaaccac                                          uugu    cc G
uuuaaagguuu   uc           ----------------------------------------aa    --cu  g 


Annotation confidence Not enough data
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Genome context
Chr2: 39364985-39365099 [-]

Database links

Mature lja-miR11101a-3p

Accession MIMAT0043796
Description Lotus japonicus lja-miR11101a-3p mature miRNA
Sequence 57 - CGAGAAACAACAUUUUGGGGG - 77
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256