miRBase entry: lja-MIR11108e

Stem-loop lja-MIR11108e


Accession
MI0035808
Description
Lotus japonicus lja-MIR11108e precursor miRNA


Sequence

uaaguaaCCCAUCAUCCAAUCACAUUGGAGauaaaugaguuggaaauaaauuaauaaauaaaauauagaaauuccaacucacuuaucucCAAUGUGAUUGGAUGAUGGGUuauuua
((((((((((((((((((((((((((((((((((.((((((((((..........................)))))))))).))))))))))))))))))))))))))))))))))

Structure
                                  a          auaaauuaauaa 
uaaguaaCCCAUCAUCCAAUCACAUUGGAGauaa ugaguuggaa            a
|||||||||||||||||||||||||||||||||| ||||||||||             
auuuauUGGGUAGUAGGUUAGUGUAACcucuauu acucaaccuu            u
                                  c          aaagauauaaaa 


Annotation confidence Not enough data
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Genome context
Chr4: 26406276-26406391 [+]

Database links

Mature lja-miR11108e-5p

Accession MIMAT0043790
Description Lotus japonicus lja-miR11108e-5p mature miRNA
Sequence 8 - CCCAUCAUCCAAUCACAUUGGAG - 30
Evidence experimental
Illumina [1]

Mature lja-miR11108e-3p

Accession MIMAT0043791
Description Lotus japonicus lja-miR11108e-3p mature miRNA
Sequence 90 - CAAUGUGAUUGGAUGAUGGGU - 110
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256