miRBase entry: lja-MIR11108c

Stem-loop lja-MIR11108c


Accession
MI0035794
Description
Lotus japonicus lja-MIR11108c precursor miRNA


Sequence

acccaugauaaaguuuuaguuaaauaacucauuauccgaucacauuggagauaaaugaguuggaaauaaauuaauaaauaaaauauagaaauuccaacucauuuaucucuAAUGUGAUUGGAUGAUGGGUUauuuaacccaaacuuuaucaugggu
((((((((((((((((..(((((((((((((((((((((((((((((((((((((((((((((((..........................)))))))))))))))))))))))))))))))))))))))))))))))..))))))))))))))))

Structure
                ua                                               auaaauuaauaa 
acccaugauaaaguuu  guuaaauaacucauuauccgaucacauuggagauaaaugaguuggaa            a
||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||             
uggguacuauuucaaa  caauuuaUUGGGUAGUAGGUUAGUGUAAucucuauuuacucaaccuu            u
                cc                                               aaagauauaaaa 


Annotation confidence Not enough data
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Genome context
Chr1: 35493937-35494092 [+]

Database links

Mature lja-miR11108c-3p

Accession MIMAT0043773
Description Lotus japonicus lja-miR11108c-3p mature miRNA
Sequence 111 - AAUGUGAUUGGAUGAUGGGUU - 131
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256