miRBase entry: lja-MIR11068e

Stem-loop lja-MIR11068e


Accession
MI0035793
Description
Lotus japonicus lja-MIR11068e precursor miRNA


Sequence

agcaccuccaauguaaaguucuuaguucuuaguuuuuaacucaaaaauaaaaacuAAGAACCUUGCAUUGAAGAUGcu
((((.((.((((((((.((((((((((.(((.(((((.....)))))))).)))))))))).)))))))).)).))))

Structure
    c  c        a          c   g     a 
agca cu caauguaa guucuuaguu uua uuuuu a
|||| || |||||||| |||||||||| ||| ||||| c
ucGU GA GUUACGUU CAAGAAucaa aau aaaaa u
    A  A        C          a   -     c 


Annotation confidence Not enough data
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Genome context
Chr3: 2145317-2145394 [-]

Database links

Mature lja-miR11068e-3p

Accession MIMAT0043772
Description Lotus japonicus lja-miR11068e-3p mature miRNA
Sequence 56 - AAGAACCUUGCAUUGAAGAUG - 76
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256