miRBase entry: lja-MIR11086

Stem-loop lja-MIR11086


Accession
MI0035788
Description
Lotus japonicus lja-MIR11086 precursor miRNA


Sequence

gagUGUCGAGUUGCUCCAUCUAACcaucgaugauuaugguccaugguUAGAUGAAGCAACUCGACACUu
(((((((((((((((.(((((((((((.(((.......))).))))))))))).)))))))))))))))

Structure
               C           c   ga 
gagUGUCGAGUUGCU CAUCUAACcau gau  u
||||||||||||||| ||||||||||| |||  u
uUCACAGCUCAACGA GUAGAUuggua cug  a
               A           c   gu 


Annotation confidence Not enough data
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Genome context
Chr3: 2276459-2276527 [+]

Database links

Mature lja-miR11086-5p

Accession MIMAT0043765
Description Lotus japonicus lja-miR11086-5p mature miRNA
Sequence 4 - UGUCGAGUUGCUCCAUCUAAC - 24
Evidence experimental
Illumina [1]

Mature lja-miR11086-3p

Accession MIMAT0043766
Description Lotus japonicus lja-miR11086-3p mature miRNA
Sequence 48 - UAGAUGAAGCAACUCGACACU - 68
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256