miRBase entry: lja-MIR11078e

Stem-loop lja-MIR11078e


Accession
MI0035778
Description
Lotus japonicus lja-MIR11078e precursor miRNA


Sequence

uuuuuuuacaccgucaaccaaucaaauuuuaaagaugugagaaaauuucucauuuuauuuaauuucauuaauugacguggcaCAUCCUUGAAAUCUGAUUGGuuacgguguaaaaaaa
.(((((((((((((.(((((((((.(((((((.((((((..........((((.(((.(((((...))))).))).)))))))))).))))))).)))))))))))))))))))))).

Structure
u             c         a       a      agaaaauuuc    u   u     u 
 uuuuuuacaccgu aaccaauca auuuuaa gaugug          ucau uua uuaau  
 ||||||||||||| ||||||||| ||||||| ||||||          |||| ||| ||||| u
 aaaaaauguggca uuGGUUAGU UAAAGUU CUACac          ggug agu aauua  
a             -         C       C      ----------    c   u     c 


Annotation confidence Not enough data
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Genome context
Chr4: 30290220-30290337 [+]

Database links

Mature lja-miR11078e-3p

Accession MIMAT0043751
Description Lotus japonicus lja-miR11078e-3p mature miRNA
Sequence 83 - CAUCCUUGAAAUCUGAUUGG - 102
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256