miRBase entry: lja-MIR11083c

Stem-loop lja-MIR11083c


Accession
MI0035777
Description
Lotus japonicus lja-MIR11083c precursor miRNA


Sequence

guugcuaguUGGGUUGCUUAAAUACUAUUCUgguggacccagacugccaCAUAGGAUUUAAGCAACUCAuaagcaac
((((((...(((((((((((((..((((..((((((.......)))))).))))..)))))))))))))..))))))

Structure
      agu             UA    UC      ac 
guugcu   UGGGUUGCUUAAA  CUAU  Uggugg  c
||||||   |||||||||||||  ||||  ||||||  c
caacga   ACUCAACGAAUUU  GAUA  accguc  a
      -au             AG    -C      ag 


Annotation confidence Not enough data
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Genome context
Chr3: 3067684-3067760 [-]

Database links

Mature lja-miR11083c-5p

Accession MIMAT0043749
Description Lotus japonicus lja-miR11083c-5p mature miRNA
Sequence 10 - UGGGUUGCUUAAAUACUAUUCU - 31
Evidence experimental
Illumina [1]

Mature lja-miR11083c-3p

Accession MIMAT0043750
Description Lotus japonicus lja-miR11083c-3p mature miRNA
Sequence 50 - CAUAGGAUUUAAGCAACUCA - 69
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256