miRBase entry: lja-MIR11082h

Stem-loop lja-MIR11082h


Accession
MI0035771
Description
Lotus japonicus lja-MIR11082h precursor miRNA


Sequence

ucauuuguuucauucgggacaggguaguuucucaccuauagcuuuuugugugguuucguuacgggaauCACAGAGAGUUGGUUGGACUuaggaagucuuguuucaggccgaugg
.((((.((((.....(((((((((...(((((..((..((((((((..(((((((((......)))))))))))))))))...))....))))).))))))))))))).)))).

Structure
u    u    cauuc         uag     --ca  -ua        ug         gu 
 cauu guuu     gggacaggg   uuucu    cc   uagcuuuu  ugugguuuc  u
 |||| ||||     |||||||||   |||||    ||   ||||||||  |||||||||   
 guag cgga     cuuuguucu   aagga    GG   GUUGAGAG  ACACuaagg  a
g    c    -----         --g     uUCA  UUG        --         gc 


Annotation confidence Not enough data
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Genome context
Chr5: 917016-917129 [+]

Database links

Mature lja-miR11082h-3p

Accession MIMAT0043742
Description Lotus japonicus lja-miR11082h-3p mature miRNA
Sequence 69 - CACAGAGAGUUGGUUGGACU - 88
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256