miRBase entry: lja-MIR11072f

Stem-loop lja-MIR11072f


Accession
MI0035761
Description
Lotus japonicus lja-MIR11072f precursor miRNA


Sequence

gccgucugaaauuagucccucccguaaaaucuaaguccucgcguuugaaaagugugugaaaauuaguccucuggcgaggaccugcuacacacacuuuuucaaacucgaggacuuagauuuuacgggAGGGACUAAUUUCAGACGGC
(((((((((((((((((((((((((((((((((((((((((.((((((((((((((((.......((((((....))))))......))))))).))))))))).)))))))))))))))))))))))))))))))))))))))))

Structure
                                         c         -       aaaauua      u 
gccgucugaaauuagucccucccguaaaaucuaaguccucg guuugaaaa gugugug       guccuc g
||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||       ||||||  
CGGCAGACUUUAAUCAGGGAgggcauuuuagauucaggagc caaacuuuu cacacac       caggag g
                                         u         u       -aucguc      c 


Annotation confidence Not enough data
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Genome context
Chr2: 14340189-14340334 [-]

Database links

Mature lja-miR11072f-3p

Accession MIMAT0043732
Description Lotus japonicus lja-miR11072f-3p mature miRNA
Sequence 127 - AGGGACUAAUUUCAGACGGC - 146
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256