miRBase entry: lja-MIR11080

Stem-loop lja-MIR11080


Accession
MI0035756
Description
Lotus japonicus lja-MIR11080 precursor miRNA


Sequence

cauguguaaaaaaacuugagagugucaagugucaucaucucaccauuaauuuuauuuuauuuuauuuuucauuuauuaucuacacaaaaguuaauagugAGAUGGUAAAACUUGACACUcacaaauuuuuuuacacuug
((.(((((((((((.(((.(((((((((((...((((((((((.(((((((((.................................))))))))).))))))))))...))))))))))).))).))))))))))).))

Structure
  u           c   a           guc          c         auuuuauuuuauuuu 
ca guguaaaaaaa uug gagugucaagu   aucaucucac auuaauuuu               u
|| ||||||||||| ||| |||||||||||   |||||||||| |||||||||               c
gu cacauuuuuuu aac cUCACAGUUCA   UGGUAGAgug uaauugaaa               a
  u           a   a           AAA          a         acacaucuauuauuu 


Annotation confidence Not enough data
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Genome context
Chr2: 30350118-30350256 [-]

Database links

Mature lja-miR11080-3p

Accession MIMAT0043727
Description Lotus japonicus lja-miR11080-3p mature miRNA
Sequence 100 - AGAUGGUAAAACUUGACACU - 119
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256