miRBase entry: lja-MIR11076

Stem-loop lja-MIR11076


Accession
MI0035748
Description
Lotus japonicus lja-MIR11076 precursor miRNA


Sequence

uaauggaaaccacaauaccGAUGGCAGUGAAGGGAACAagugcaauaaccacaauaccgacaaaugaagcuaacguuggguuguugcacucgUUCCCUUCACUGCCAUCGGuauuguggcguuuguua
(((((((..((((((((((((((((((((((((((((.((((((((((((.((((...................)))))))))))))))).))))))))))))))))))))))))))))..)))))))

Structure
       aa                            A            a    accgacaa 
uaaugga  ccacaauaccGAUGGCAGUGAAGGGAAC agugcaauaacc caau        a
|||||||  |||||||||||||||||||||||||||| |||||||||||| ||||        u
auuguuu  gguguuauGGCUACCGUCACUUCCCUUg ucacguuguugg guug        g
       gc                            c            -    caaucgaa 


Annotation confidence Not enough data
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Genome context
Chr2: 43039313-43039440 [+]

Database links

Mature lja-miR11076-5p

Accession MIMAT0043715
Description Lotus japonicus lja-miR11076-5p mature miRNA
Sequence 20 - GAUGGCAGUGAAGGGAACA - 38
Evidence experimental
Illumina [1]

Mature lja-miR11076-3p

Accession MIMAT0043716
Description Lotus japonicus lja-miR11076-3p mature miRNA
Sequence 93 - UUCCCUUCACUGCCAUCGG - 111
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256