miRBase entry: lja-MIR11073

Stem-loop lja-MIR11073


Accession
MI0035745
Description
Lotus japonicus lja-MIR11073 precursor miRNA


Sequence

ggauucuggguuGGGUUGGAUGGAUUUGAACugaauccgaaaucugauccgaacuugguuggguuguaguaaaauccauccgauuaauccgauuaccc
(((.((.(((((((.((((((((((((..(((((((((((........(((....)))))))))).)))).))))))))))))))))))))).).)).

Structure
-  - u  u       G            GA    -       aaucugau   a 
 gg a uc ggguuGG UUGGAUGGAUUU  ACug aauccga        ccg a
 || | || ||||||| ||||||||||||  |||| |||||||        |||  
 cc u ag ccuaauu agccuaccuaaa  ugau uuggguu        ggu c
c  a u  -       -            -a    g       --------   u 


Annotation confidence Not enough data
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Genome context
Chr3: 28537743-28537840 [+]

Database links

Mature lja-miR11073-5p

Accession MIMAT0043712
Description Lotus japonicus lja-miR11073-5p mature miRNA
Sequence 13 - GGGUUGGAUGGAUUUGAAC - 31
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256