miRBase entry: lja-MIR11072a

Stem-loop lja-MIR11072a


Accession
MI0035744
Description
Lotus japonicus lja-MIR11072a precursor miRNA


Sequence

ggguuaauccucuaauuggucccugugguugugugaccgucugaaauuagucccucccguaaaaucuaaguccucgcguuugaaaaaguguguguagcagguccucgccggagggacuaauuuccacacacuuuucaaacgugaggacuuaaauuuuacGGGAGGGACUAAUUUCAGAcggucacacaaccacagggaccaauuagaggauuauccc
(((.(((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((.((((((((((((((((((((.(((((((.....(((((((....)).)))))......))))))))))))))))))))))))))).))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))).)))

Structure
   u                                                             c                    a       -uagca     -  g 
ggg uaauccucuaauuggucccugugguugugugaccgucugaaauuagucccucccguaaaau uaaguccucgcguuugaaaa gugugug      ggucc uc c
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||      ||||| ||  
ccc auuaggagauuaaccagggacaccaacacacuggcAGACUUUAAUCAGGGAGGGcauuuua auucaggagugcaaacuuuu cacacac      ucagg ag c
   u                                                             a                    -       cuuuaa     g  g 


Annotation confidence Not enough data
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Genome context
Chr2: 18093711-18093927 [+]

Database links

Mature lja-miR11072a-3p

Accession MIMAT0043711
Description Lotus japonicus lja-miR11072a-3p mature miRNA
Sequence 160 - GGGAGGGACUAAUUUCAGA - 178
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256