miRBase entry: lja-MIR11070

Stem-loop lja-MIR11070


Accession
MI0035742
Description
Lotus japonicus lja-MIR11070 precursor miRNA


Sequence

cuuuuuGGAGGCCCUGGGCUGUGGGucugcuugcacaagcccagggcccacagcccagggccggcccugag
......((.(((((((((((((((((((((((....))))...)))))))))))))))))))..)).....

Structure
cuuuuu  -A                   ---    g 
      GG  GGCCCUGGGCUGUGGGucu   gcuu c
      ||  |||||||||||||||||||   ||||  
      cc  ccgggacccgacacccggg   cgaa a
-gaguc  gg                   acc    c 


Annotation confidence Not enough data
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Genome context
Chr4: 13560609-13560679 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from lja-MIR11070
Name Accession Chromosome Start End Strand Confidence




Database links

Mature lja-miR11070-5p

Accession MIMAT0043709
Description Lotus japonicus lja-miR11070-5p mature miRNA
Sequence 7 - GGAGGCCCUGGGCUGUGGG - 25
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256