miRBase entry: lja-MIR11066

Stem-loop lja-MIR11066


Accession
MI0035735
Description
Lotus japonicus lja-MIR11066 precursor miRNA


Sequence

uugaguaugccacguauggaaauUCAAGAUGCUCUAUGUUUGaAACAUAGGGGAUCUUGAAUuuccaugucuguuguaccuga
....(((((.((..((((((((((((((((.(((((((((...))))))))).))))))))))))))))..)).)))))....

Structure
uuga     c  cg                G         U 
    guaug ca  uauggaaauUCAAGAU CUCUAUGUU  
    ||||| ||  |||||||||||||||| ||||||||| G
    caugu gu  guaccuuUAAGUUCUA GGGAUACAA  
aguc     u  cu                G         a 


Annotation confidence Not enough data
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Genome context
Chr1: 55867455-55867537 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from lja-MIR11066
Name Accession Chromosome Start End Strand Confidence




Database links

Mature lja-miR11066-5p

Accession MIMAT0043698
Description Lotus japonicus lja-miR11066-5p mature miRNA
Sequence 24 - UCAAGAUGCUCUAUGUUUG - 42
Evidence experimental
Illumina [1]

Mature lja-miR11066-3p

Accession MIMAT0043699
Description Lotus japonicus lja-miR11066-3p mature miRNA
Sequence 44 - AACAUAGGGGAUCUUGAAU - 62
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256