miRBase entry: mdm-MIR169n

Stem-loop mdm-MIR169n


Accession
MI0035670
Description
Malus domestica mdm-MIR169n precursor miRNA

Literature search
4 open access papers mention mdm-MIR169n
(9 sentences)

Sequence

uaacugaugagggaagaaagguccuacaugaggaugaagagccguguuuugUAGCCAAGGAUGACUUGCCUGcaaccucccaaaggccuccgaaaaauuuauguguacugugagagauaugcuugguuagcuuagcuaguguuagcuaagcuagcuagcuaguuugcuagugguuuaagaauccuugucugguauacaggcagucuccuuggcuaucgagacagguucuuuucucucaugcugggccucuucuuccaugggucuc
.....(((...(((((((((((((..((((((((.((((((((.(((((((((((((((((.((((.(((((..(((.....((((..((..(((.......(((((((.....)).))))).(((((((((((((((....)))))))))))))))(((((....)))))..)))..))..))))....)))...))))))))))))))))))).))))))))))))))))).))))))..)))))).)))))))....)))..

Structure
uaacu   -gag       -      ua      -  u        g       -          U    U     -ca   uccca    cc  cg   aauuuauguguacugugagagauaugcu               g 
     gau    ggaagaa aggucc  caugag ga gaagagcc uguuuug UAGCCAAGGA GACU GCCUG   acc     aagg  uc  aaa                            ugguuagcuuagcua u
     |||    ||||||| ||||||  |||||| || |||||||| ||||||| |||||||||| |||| |||||   |||     ||||  ||  |||                            |||||||||||||||  
     cug    ccuucuu uccggg  guacuc cu uuucuugg acagagc aucgguuccu cuga cggac   ugg     uucc  ag  uuu                            aucgaucgaaucgau g
---cu   ggua       c      uc      u  -        -       u          -    -     aua   -ucug    ua  aa   ------------ggugaucguuugaucg               u 


Annotation confidence Not enough data
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Genome context
MDC003479.331: 24710-24974 [-]

Database links

Mature mdm-miR169n

Accession MIMAT0043619
Description Malus domestica mdm-miR169n mature miRNA
Sequence 52 - UAGCCAAGGAUGACUUGCCUG - 72
Evidence experimental
Illumina [1]

References

  1. Identification of apple miRNAs and their potential role in fire blight resistance
    "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
    Tree Genet Genomes. (2014) 11:812