miRBase entry: mdm-MIR169m

Stem-loop mdm-MIR169m


Accession
MI0035669
Description
Malus domestica mdm-MIR169m precursor miRNA

Literature search
4 open access papers mention mdm-MIR169m
(9 sentences)

Sequence

agagaagugaagagaagagaggucuugcaugagaguuagagccuuguuuggUAGCCAAGGAUGACUUGCCUGcucuaccuagagagacgaacuccacuuguuuguaugaggaaaacuccuguuuggccaggcaggcaucccuggcuaauuugacaggcucuucuuucucaugccaggccuucucuucuuccuugagc
....(((.(((((..((((((((((.(((((((((..(((((((.(((...((((((.(((((.((((((((((((......))))((((((.......))))))...((((....)))).......))))))))))))).))))))....))))))))))...))))))))).))))).)))))))))))))....

Structure
agag   u     ga     -     u         -uu       u   -ugg      A     A        --------cucuaccuagagag      uc 
    aag gaaga  agaga ggucu gcaugagag   agagccu guu    UAGCCA GGAUG CUUGCCUG                      acgaac  c
    ||| |||||  ||||| ||||| |||||||||   ||||||| |||    |||||| ||||| ||||||||                      ||||||  a
    uuc cuucu  ucucu ccgga cguacucuu   ucucgga cag    aucggu ccuac ggacggac                      uguuug  c
cgag   -     --     u     c         ucu       -   uuua      c     -        cgguuuguccucaaaaggagua      uu 


Annotation confidence Not enough data
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Genome context
MDC013245.290: 4504-4700 [+]

Database links

Mature mdm-miR169m

Accession MIMAT0043618
Description Malus domestica mdm-miR169m mature miRNA
Sequence 52 - UAGCCAAGGAUGACUUGCCUG - 72
Evidence experimental
Illumina [1]

References

  1. Identification of apple miRNAs and their potential role in fire blight resistance
    "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
    Tree Genet Genomes. (2014) 11:812