Stem-loop mdm-MIR169l

Accession

MI0035668

Description

Malus domestica mdm-MIR169l precursor miRNA

Literature search

4 open access papers mention mdm-MIR169l
(9 sentences)

Sequence

augacugaugagggaagaaagguccugcaugaggauaaagagccguucuugUAGCCAAGGAUGACUUGCCUGcagccucccaaaggccucugcaacauauauauacaggcagagcucgcuagguagcuugcuagggauagcuaggguuuaagaauccuggugcuugguuagcuaagcuagcuaacuuccuaagguuuaauuaagaauccuugugugguauacaggcagucuccuuggcuaucgagacagguucuuuucucucaugcuggaccucuucuuccaugggaucu
..((((.(((.(((((((..(((((.((((((((..((((((((..(((((((((((((((.((((.(((((..((((.....))))((((((...............))))))...(((((.(((((.((((((....(((((((((....))))))))).)))))).)))))..)))))..(((.(.((((((((......))).))))).).)))...))))))))))))))))))).)))))..))))))))..)))))))).)))))))))))).))).)).)).

Structure

au  -  g   a       aa     u        au        gu     -          U    U     cagccucccaaaggccucugcaacauauauauacaggcagagcuc     -g     u      gaua         u 
  ga cu aug gggaaga  ggucc gcaugagg  aaagagcc  ucuug UAGCCAAGGA GACU GCCUG                                             gcuag  uagcu gcuagg    gcuaggguu a
  || || ||| |||||||  ||||| ||||||||  ||||||||  ||||| |||||||||| |||| |||||                                             |||||  ||||| ||||||    |||||||||  
  cu gg uac uucuucu  ccagg cguacucu  uuucuugg  agagc aucgguuccu cuga cggac                                             cgauc  aucga ugguuc    ugguccuaa a
-u  a  g   c       --     u        cu        ac     u          -    -     -----auaugguguguuccuaagaauuaauuuggaauccuucaau     ga     u      ---g         g 

Annotation confidence Not enough data

Genome context

MDC011475.284: 254-543 [+]

Mature mdm-miR169l

• Accession: MIMAT0043617
• Description: Malus domestica mdm-miR169l mature miRNA
• Sequence: 52 - UAGCCAAGGAUGACUUGCCUG - 72
• Evidence: experimental ; Illumina [1]

References

1. Identification of apple miRNAs and their potential role in fire blight resistance
   "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
   Tree Genet Genomes. (2014) 11:812