Stem-loop sequence mdm-MIR169k

Accession

MI0035667 (change log)

Description

Malus domestica miR169k stem-loop

Literature search

4 open access papers mention mdm-MIR169k
(9 sentences)

Stem-loop

   aucaaa     a     -auauu       - u     a     ag       u u    u   -        au    u     c  u     c   cgcuccuaauucc        -c    -   u  --c     g 
5'       aggaa aggaa      gaagaga g guaua cauga  agaagag g uguu ggu agccaagg  gacu gccug ug gcugc gcg             aauccaau  cacg agg gg   aguac u
         ||||| |||||      ||||||| | ||||| |||||  ||||||| | |||| ||| ||||||||  |||| ||||| || ||||| |||             ||||||||  |||| ||| ||   |||||  
3'       uucuu uucuu      cuucucu c cauau guacu  ucuucuc c acag uca ucgguuuc  cuga cggac ac cgacg cgc             uuggguug  gugc ucc cu   ucaug a
   --cuuc     c     cuucuu       u c     c     cu       - r    u   a        cu    -     c  -     a   ----------cuc        uu    a   u  cac     a 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates: MDC002619.349: 91031-91292 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0035667

Mature sequence mdm-miR169k

• Accession: MIMAT0043616
• Sequence: 62 - uagccaaggaugacuugccug - 82
• Evidence: experimental; Illumina [1]

References

1. "Identification of apple miRNAs and their potential role in fire blight resistance" Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I Trees Genet Genomes. 11:812(2014).