miRBase entry: mdm-MIR393h

Stem-loop mdm-MIR393h


Accession
MI0035637
Description
Malus domestica mdm-MIR393h precursor miRNA

Literature search
6 open access papers mention mdm-MIR393h
(31 sentences)

Sequence

uuaauugcuucuagaggaggcauccaaagggaucgcauugaucccagcuaacuauuuauguccaucgcuugguuuggAUCAUGCUAUCCCUUUGGAUUucuccuuuggaagcuucaa
......((((((((((((((.((((((((((((.((((.(((((.((((((.................)))))).))))))))).)))))))))))).)))))))))))))).....

Structure
uuaauu              c            c    u     c      cuauuua 
      gcuucuagaggagg auccaaagggau gcau gaucc agcuaa       u
      |||||||||||||| |||||||||||| |||| ||||| ||||||       g
      cgaagguuuccucu UAGGUUUCCCUA CGUA CUAgg uugguu       u
-aacuu              U            U    -     u      cgcuacc 


Annotation confidence Not enough data
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Genome context
MDC012883.431: 61501-61617 [-]

Database links

Mature mdm-miR393h

Accession MIMAT0043584
Description Malus domestica mdm-miR393h mature miRNA
Sequence 78 - AUCAUGCUAUCCCUUUGGAUU - 98
Evidence experimental
Illumina [1]

References

  1. Identification of apple miRNAs and their potential role in fire blight resistance
    "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
    Tree Genet Genomes. (2014) 11:812