miRBase entry: mdm-MIR319e

Stem-loop mdm-MIR319e


Accession
MI0035621
Description
Malus domestica mdm-MIR319e precursor miRNA

Literature search
4 open access papers mention mdm-MIR319e
(7 sentences)

Sequence

aucuuagagauaguuugaaguGAGCUUUCUUCAGUCCACUCauggaagggcaaaggguuugaauuagcugccgacucauucauucaaacucaguagaaauggaguggauauuucuacugugaaugugugaaugaugcgggagauaacuucauucuuuucuucucugugcuuggacugaagggagcucccuuuuacugucuucuuugu
......((((((((..((((.(((((((((((((((((..((((((.(((.((((((..(((((((.((.(((..((((((((.((..(.(((((((((((.......))))))))))).)..)).))))))))..))).)).))).)))).))))))))).))))))..))))))))))))))))).)))).))))))))......

Structure
aucuua        uu    u                 CU      a   c      uu    -   g  g   ac        u  aa u           ga 
      gagauagu  gaag GAGCUUUCUUCAGUCCA  Caugga ggg aaaggg  ugaa uua cu ccg  ucauucau ca  c caguagaaaug  g
      ||||||||  |||| |||||||||||||||||  |||||| ||| ||||||  |||| ||| || |||  |||||||| ||  | |||||||||||  u
      uucuguca  uuuc cucgagggaagucaggu  gugucu uuc uuuucu  acuu aau ga ggc  aguaagug gu  g gucaucuuuau  g
uguuuc        -u    c                 uc      c   -      -u    c   a  g   gu        u  aa u           ag 


Annotation confidence Not enough data
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Genome context
MDC002990.685: 6834-7040 [+]

Database links

Mature mdm-miR319e

Accession MIMAT0043567
Description Malus domestica mdm-miR319e mature miRNA
Sequence 22 - GAGCUUUCUUCAGUCCACUC - 41
Evidence experimental
Illumina [1]

References

  1. Identification of apple miRNAs and their potential role in fire blight resistance
    "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
    Tree Genet Genomes. (2014) 11:812