miRBase entry: mdm-MIR530a

Stem-loop mdm-MIR530a


Accession
MI0035597
Description
Malus domestica mdm-MIR530a precursor miRNA

Literature search
1 open access papers mention mdm-MIR530a
(2 sentences)

Sequence

acagcgcagaugccaaaauguugcuuuuaucUGCAUUUGCACCUGCACUUGUgcucguucauguuucuuccuuccuugaaaaacccuaaagccaaagcuucagagaauggaaaagguuuuagauauaugagaacaaaaaugacaagaggaaaggaauaagggaaragaaggaaaauggaaaucagaaggaagagcaggaacaagcaagaggugcaggugccagugcaggugaaugccauuuugguucauuaaaaaca
........((.(((((((((..((.((((((((((((.((((((((((((.((((.((((.((((.(((((((((((......((((....((....((((...............(((((......))))).............))))...))....)))).....)))))..............)))))))))).)))).))))..)))))))))))).)))))))))))).)))))))))))))..........

Structure
--acagcgca  u         uu  u            U            -G    c    a    u      --------------     gaaaaa    aaag  aaag    agagaauggaaaagg     ga 
          ga gccaaaaug  gc uuuaucUGCAUU GCACCUGCACUU  Ugcu guuc uguu cuuccu              uccuu      cccu    cc    cuuc               uuuua  u
          || |||||||||  || |||||||||||| ||||||||||||  |||| |||| |||| ||||||              |||||      ||||    ||    ||||               |||||   
          cu ugguuuuac  cg aaguggacguga cguggacgugga  acga caag acga gaagga              aggaa      ggga    gg    ggag               agagu  a
acaaaaauua  -         --  u            c            ga    a    g    -      agacuaaagguaaa     -garaa    auaa  -aaa    --aacaguaaaaaca     au 


Annotation confidence Not enough data
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Genome context
MDC007946.169: 468-724 [-]

Database links

Mature mdm-miR530a

Accession MIMAT0043542
Description Malus domestica mdm-miR530a mature miRNA
Sequence 32 - UGCAUUUGCACCUGCACUUGU - 52
Evidence experimental
Illumina [1]

References

  1. Identification of apple miRNAs and their potential role in fire blight resistance
    "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
    Tree Genet Genomes. (2014) 11:812