Stem-loop sly-MIR10542

Accession

MI0033711

Description

Solanum lycopersicum sly-MIR10542 precursor miRNA

Sequence

uuugaUAGAAGAAUCAUAUAUACCCCUAaauaauuuuuuuuaaaaaauuagaauuaagaaauuuaaauuuaaaacuaauuuuuuaacuuccguuaagugaaggguauaugugagcaauuuuguaacagc
....((((((...((((((((((((.....((((.....((((((((((((..(((((.........)))))..)))))))))))).....))))......))))))))))))....))))))......

Structure

--uuug      -GAA            -CUAaa    uuuuu            aa     aaa 
      aUAGAA    UCAUAUAUACCC      uaau     uuaaaaaauuag  uuaag   u
      ||||||    ||||||||||||      ||||     ||||||||||||  |||||   u
      uguuuu    aguguauauggg      auug     aauuuuuuaauc  aauuu   u
cgacaa      aacg            aaguga    ccuuc            aa     aaa 

Annotation confidence Not enough data

Genome context

GL758742.1: 3004-3132 [-]

Mature sly-miR10542

• Accession: MIMAT0042037
• Description: Solanum lycopersicum sly-miR10542 mature miRNA
• Sequence: 6 - UAGAAGAAUCAUAUAUACCCCUA - 28
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25218481
   Prediction and characterization of Tomato leaf curl New Delhi virus (ToLCNDV) responsive novel microRNAs in Solanum lycopersicum
   "Pradhan B, Naqvi AR, Saraf S, Mukherjee SK, Dey N"
   "Virus Res (2015) 195:183-195