miRBase entry: sly-MIR10540

Stem-loop sly-MIR10540


Accession
MI0033708
Description
Solanum lycopersicum sly-MIR10540 precursor miRNA


Sequence

gguuauucgacuaauaguuauuauuucagaaagucacuuucuuuagugaagaaaaaguuggaaaucaagaaaaaagaugacuuucuaaaAUAAUAACUAUUAGUUGAAUGaccau
((((((((((((((((((((((((((.(((((((((((((.(((..(((...............)))..))))))).))))))))).))))))))))))))))))))))))))..

Structure
--                          c         -    c   ag   agaaaa 
  gguuauucgacuaauaguuauuauuu agaaaguca cuuu uuu  uga      a
  |||||||||||||||||||||||||| ||||||||| |||| |||  |||      g
  ccaGUAAGUUGAUUAUCAAUAAUAaa ucuuucagu gaaa aaa  acu      u
ua                          a         a    -   ga   aaaggu 


Annotation confidence Not enough data
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Genome context
chr6: 57164-57278 [+]

Database links

Mature sly-miR10540

Accession MIMAT0042034
Description Solanum lycopersicum sly-miR10540 mature miRNA
Sequence 90 - AUAAUAACUAUUAGUUGAAUG - 110
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25218481
    Prediction and characterization of Tomato leaf curl New Delhi virus (ToLCNDV) responsive novel microRNAs in Solanum lycopersicum
    "Pradhan B, Naqvi AR, Saraf S, Mukherjee SK, Dey N"
    "Virus Res (2015) 195:183-195