miRBase entry: sly-MIR10538

Stem-loop sly-MIR10538


Accession
MI0033706
Description
Solanum lycopersicum sly-MIR10538 precursor miRNA


Sequence

gcgucAGAUUGAUAUACGUUACUCACAGUaacguuuuaaaaguaaaacguuacuuacagugacguauaucaaccuaauauug
.....((.(((((((((((((((...((((((((((((....))))))))))))...))))))))))))))).)).......

Structure
--gcguc  A               CAC            a 
       AG UUGAUAUACGUUACU   AGUaacguuuua a
       || |||||||||||||||   ||||||||||||  
       uc aacuauaugcaguga   ucauugcaaaau a
guuauaa  c               cau            g 


Annotation confidence Not enough data
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Genome context
chr3: 66202190-66202271 [+]

Database links

Mature sly-miR10538

Accession MIMAT0042032
Description Solanum lycopersicum sly-miR10538 mature miRNA
Sequence 6 - AGAUUGAUAUACGUUACUCACAGU - 29
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25218481
    Prediction and characterization of Tomato leaf curl New Delhi virus (ToLCNDV) responsive novel microRNAs in Solanum lycopersicum
    "Pradhan B, Naqvi AR, Saraf S, Mukherjee SK, Dey N"
    "Virus Res (2015) 195:183-195