Stem-loop sequence sly-MIR6025

Accession

MI0033697 (change log)

Description

Solanum lycopersicum miR6025 stem-loop

Literature search

1 open access papers mention sly-MIR6025
(4 sentences)

Stem-loop

   --ug    a      a             u            c    ga  a  uaauu      guu 
5'     guau ccaaua uugagauaacauc agguuuaaugau uuuu  gu gc     uguaua   a
       |||| |||||| ||||||||||||| |||||||||||| ||||  || ||     ||||||   u
3'     cgua gguugu gacucuauuguag uccaaguuauua aaaa  ca cg     acaugu   u
   aaua    c      -             u            u    -a  -  --uuc      acu 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (SL2.50; GCA_000188115.2): chr4: 421941-422072 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from sly-MIR6025

• sly-MIR5300: chr4: 423125-423389 [+]
• sly-MIR6025: chr4: 421941-422072 [-]

Database links

• miRBase Tracker:MI0033697

Mature sequence sly-miR6025

• Accession: MIMAT0042023
• Sequence: 6 - uaccaauaauugagauaacauc - 27
• Evidence: experimental; Illumina [1]

References

1. PMID:25218481 "Prediction and characterization of Tomato leaf curl New Delhi virus (ToLCNDV) responsive novel microRNAs in Solanum lycopersicum" Pradhan B, Naqvi AR, Saraf S, Mukherjee SK, Dey N Virus Res. 195:183-195(2015).