Stem-loop sly-MIR7981c

Accession

MI0033695

Description

Solanum lycopersicum sly-MIR7981c precursor miRNA

Sequence

uuugcUCGAAAUCUCAGAGACACACUUAUaauauauuaggcuccuauuaccacacucccuuaaacuuauuguauaaguaauuuucuaucccuuuucgacauacgugacacuaacuugaaaaaaaaagucaaucauggguccacaagagugucacguaggucgaaaagggguaaaaaauuauuaauaaaauaaguucaggaauaauagaaccuuauuauaguauaacugugucucugagauuucggacauagg
..((.(((((((((((((((((((.(((((.((((.((((...((((((........(((..((((((((.(((.(((((((((.((((((((((((((.(((((((((((..((((.........................))))))))))))))).)))))))))))))).))))))))).))).)))))))).)))..))))))...)))).)))).))))).))))))))))))))))))).))....

Structure

--uu  c                   C     a    u    cuc      ccacacuc   ua        g   a         c              a           aa    aaaaaaaaagu 
    ug UCGAAAUCUCAGAGACACA UUAUa uaua uagg   cuauua        ccu  aacuuauu uau aguaauuuu uaucccuuuucgac uacgugacacu  cuug           c
    || ||||||||||||||||||| ||||| |||| ||||   ||||||        |||  |||||||| ||| ||||||||| |||||||||||||| |||||||||||  ||||           a
    ac ggcuuuagagucucugugu aauau auau auuc   gauaau        gga  uugaauaa aua uuauuaaaa auggggaaaagcug augcacuguga  gaac           a
ggau  a                   c     g    u    caa      ------aa   -c        a   a         a              g           --    accuggguacu 

Annotation confidence Not enough data

Genome context

chr7: 6501675-6501926 [+]

Mature sly-miR7981c

• Accession: MIMAT0042021
• Description: Solanum lycopersicum sly-miR7981c mature miRNA
• Sequence: 6 - UCGAAAUCUCAGAGACACACUUAU - 29
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25218481
   Prediction and characterization of Tomato leaf curl New Delhi virus (ToLCNDV) responsive novel microRNAs in Solanum lycopersicum
   "Pradhan B, Naqvi AR, Saraf S, Mukherjee SK, Dey N"
   "Virus Res (2015) 195:183-195