Stem-loop sequence sly-MIR398a

Accession

MI0033688 (change log)

Description

Solanum lycopersicum miR398a stem-loop

Literature search

14 open access papers mention sly-MIR398a
(50 sentences)

Stem-loop

   --ca      u                  au  g       --uguuu    c 
5'     auaggg ugauuugagaacauaugu  gu cauauuu       guaa a
       |||||| ||||||||||||||||||  || |||||||       ||||  
3'     uguccc gcuggacucuuguauaca  ca guauaaa       cauu a
   caga      c                  --  -       uauuugc    u 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (SL2.50; GCA_000188115.2): chr11: 50299414-50299514 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0033688

Mature sequence sly-miR398a

• Accession: MIMAT0042014
• Sequence: 76 - uauguucucaggucgccccug - 96
• Evidence: experimental; Illumina [1]

References

1. PMID:25218481 "Prediction and characterization of Tomato leaf curl New Delhi virus (ToLCNDV) responsive novel microRNAs in Solanum lycopersicum" Pradhan B, Naqvi AR, Saraf S, Mukherjee SK, Dey N Virus Res. 195:183-195(2015).