miRBase entry: sly-MIR398a

Stem-loop sly-MIR398a


Accession
MI0033688
Description
Solanum lycopersicum sly-MIR398a precursor miRNA

Literature search
14 open access papers mention sly-MIR398a
(51 sentences)

Sequence

caauaggguugauuugagaacauauguaugugcauauuuuguuuguaacaauuuaccguuuauaaauaugacacaUAUGUUCUCAGGUCGCCCCUGuagac
..((((((.((((((((((((((((((..((.(((((((.....((((....)))).......))))))))))))))))))))))))))).))))))....

Structure
--ca      u                  au  g       --uguuu    c 
    auaggg ugauuugagaacauaugu  gu cauauuu       guaa a
    |||||| ||||||||||||||||||  || |||||||       ||||  
    uGUCCC GCUGGACUCUUGUAUaca  ca guauaaa       cauu a
caga      C                  --  -       uauuugc    u 


Annotation confidence Not enough data
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Genome context
chr11: 50299414-50299514 [-]

Database links

Mature sly-miR398a

Accession MIMAT0042014
Description Solanum lycopersicum sly-miR398a mature miRNA
Sequence 76 - UAUGUUCUCAGGUCGCCCCUG - 96
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25218481
    Prediction and characterization of Tomato leaf curl New Delhi virus (ToLCNDV) responsive novel microRNAs in Solanum lycopersicum
    "Pradhan B, Naqvi AR, Saraf S, Mukherjee SK, Dey N"
    "Virus Res (2015) 195:183-195