miRBase entry: sly-MIR10529

Stem-loop sly-MIR10529


Accession
MI0033683
Description
Solanum lycopersicum sly-MIR10529 precursor miRNA


Sequence

aacauAACGAGUGAGACUUGCUCAGUUGGuaaaacaccuccacggucuaaccaauuaucuuggucgaggguucaagucauguuggaagcaaugugagggcguccagcuuagcaagccucauccguuuugcuuc
..((.((((.(((((.((((((.((((((....((.(((.((((......(((((...(((((........)))))....)))))......)))).))).)))))))).)))))).))))).)))).))....

Structure
--aa  u    A     A      C      uaaa  a   c    gucuaa     -uau     ucg 
    ca AACG GUGAG CUUGCU AGUUGG    ac ccu cacg      ccaau    cuugg   a
    || |||| ||||| |||||| ||||||    || ||| ||||      |||||    |||||    
    gu uugc uacuc gaacga ucgacc    ug ggg gugu      gguug    gaacu   g
cuuc  u    c     c      u      ----  c   a    aacgaa     uacu     ugg 


Annotation confidence Not enough data
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Genome context
chr11: 1186495-1186627 [+]

Database links

Mature sly-miR10529

Accession MIMAT0042009
Description Solanum lycopersicum sly-miR10529 mature miRNA
Sequence 6 - AACGAGUGAGACUUGCUCAGUUGG - 29
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25218481
    Prediction and characterization of Tomato leaf curl New Delhi virus (ToLCNDV) responsive novel microRNAs in Solanum lycopersicum
    "Pradhan B, Naqvi AR, Saraf S, Mukherjee SK, Dey N"
    "Virus Res (2015) 195:183-195